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Research: Unraveling the Genetics of Congenital Diaphragmatic Hernia: An Ongoing Challenge

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Research: Unraveling the Genetics of Congenital Diaphragmatic Hernia: An Ongoing Challenge

Front Pediatr

. 2022 Feb 3;9:800915. doi: 10.3389/fped.2021.800915. eCollection 2021. https://pubmed.ncbi.nlm.nih.gov/35186825/

Unraveling the Genetics of Congenital Diaphragmatic Hernia: An Ongoing Challenge

Erwin Brosens 1Nina C J Peters 2Kim S van Weelden 1 2 3Charlotte Bendixen 4Rutger W W Brouwer 5 6Frank Sleutels 1Hennie T Bruggenwirth 1Wilfred F J van Ijcken 5 6Danielle C M Veenma 1 7Suzan C M Cochius-Den Otter 3Rene M H Wijnen 3Alex J Eggink 2Marieke F van Dooren 1Heiko Martin Reutter 8 9Robbert J Rottier 3 6J Marco Schnater 3Dick Tibboel 3Annelies de Klein 1Affiliations expand

Free PMC article

Abstract

Congenital diaphragmatic hernia (CDH) is a congenital structural anomaly in which the diaphragm has not developed properly. It may occur either as an isolated anomaly or with additional anomalies. It is thought to be a multifactorial disease in which genetic factors could either substantially contribute to or directly result in the developmental defect. Patients with aneuploidies, pathogenic variants or de novo Copy Number Variations (CNVs) impacting specific genes and loci develop CDH typically in the form of a monogenetic syndrome. These patients often have other associated anatomical malformations. In patients without a known monogenetic syndrome, an increased genetic burden of de novo coding variants contributes to disease development. In early years, genetic evaluation was based on karyotyping and SNP-array. Today, genomes are commonly analyzed with next generation sequencing (NGS) based approaches. While more potential pathogenic variants are being detected, analysis of the data presents a bottleneck-largely due to the lack of full appreciation of the functional consequence and/or relevance of the detected variant. The exact heritability of CDH is still unknown. Damaging de novo alterations are associated with the more severe and complex phenotypes and worse clinical outcome. Phenotypic, genetic-and likely mechanistic-variability hampers individual patient diagnosis, short and long-term morbidity prediction and subsequent care strategies. Detailed phenotyping, clinical follow-up at regular intervals and detailed registries are needed to find associations between long-term morbidity, genetic alterations, and clinical parameters. Since CDH is a relatively rare disorder with only a few recurrent changes large cohorts of patients are needed to identify genetic associations. Retrospective whole genome sequencing of historical patient cohorts using will yield valuable data from which today’s patients and parents will profit Trio whole genome sequencing has an excellent potential for future re-analysis and data-sharing increasing the chance to provide a genetic diagnosis and predict clinical prognosis. In this review, we explore the pitfalls and challenges in the analysis and interpretation of genetic information, present what is currently known and what still needs further study, and propose strategies to reap the benefits of genetic screening.

Keywords: congenital; counseling; development; diaphragm; discordant monozygotic twin; foregut; genetics; hernia.

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